Large and small files for testing

Small files

Small files are useful for quickly testing new code.

ls $ssd/trim/*fastq.gz -Sr | head

/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.3.H10.TACAACGT.L006.R1.C72JMACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.3.H10.TACAACGT.L004.R1.C723YACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.3.H10.TACAACGT.L002.R1.C6WURACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.3.H02.GTTGTCCC.L006.R1.C72JMACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.3.H02.GTTGTCCC.L004.R1.C723YACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.3.H02.GTTGTCCC.L002.R1.C6WURACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.3.B09.AAAGGTCC.L006.R1.C72JMACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.3.C04.CTAATGAC.L006.R1.C72JMACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.3.B09.AAAGGTCC.L004.R1.C723YACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.3.C04.CTAATGAC.L004.R1.C723YACXX.trim.fastq.gz

Large files

Large files are useful for finding the minimum required memory to run code.

ls $ssd/trim/*fastq.gz -S | head

/mnt/gluster/data/internal_supp/singleCellSeq/trim/19101.1.bulk.GGATACGT.L001.R1.C6WYKACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.1.bulk.CACGGTGT.L001.R1.C6WYKACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19098.3.bulk.CGGAGTTA.L001.R1.C6WYKACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19098.1.bulk.GCTGAGGT.L001.R1.C6WYKACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.2.bulk.CGTTCTAC.L001.R1.C6WYKACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.3.bulk.GTCAATCC.L001.R1.C6WYKACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19239.1.bulk.ACAGCGAA.L001.R1.C6WYKACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19098.2.bulk.AGTCCACC.L001.R1.C6WYKACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19101.1.bulk.GGATACGT.L008.R1.C72JMACXX.trim.fastq.gz
/mnt/gluster/data/internal_supp/singleCellSeq/trim/19101.3.bulk.ACACAACT.L001.R1.C6WYKACXX.trim.fastq.gz

Session information

sessionInfo()

R version 3.1.1 (2014-07-10)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] knitr_1.10.5

loaded via a namespace (and not attached):
[1] digest_0.6.4    evaluate_0.7    formatR_0.10    htmltools_0.2.6
[5] rmarkdown_0.5.1 stringr_0.6.2   tools_3.1.1     yaml_2.1.13