Last updated: 2022-01-06
Checks: 2 0
Knit directory: fucci-seq/analysis/
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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/license.Rmd) and HTML (docs/license.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.
| File | Version | Author | Date | Message |
|---|---|---|---|---|
| Rmd | 2e123b3 | John Blischak | 2022-01-06 | Clarify license/attribution/citation |
| Rmd | 5b3779c | John Blischak | 2019-02-01 | Update workflowr to 1.0.1 with wflow_update(). |
| html | 97885b6 | Joyce Hsiao | 2017-12-01 | Build site. |
| Rmd | ead19fb | Joyce Hsiao | 2017-12-01 | add lab info |
| html | b729315 | jhsiao999 | 2017-10-12 | add CONFESS preliminary results |
| Rmd | e7f5236 | John Blischak | 2017-10-11 | Start workflowr project. |
The code is available under the MIT license. The text, data, and figures are available under the CC-BY license. Please see the file LICENSE for the full license text.
Both of these allow you to reuse, adapt, or redistribute the content as long as you attribute us. If you use our data, please attribute us as follows:
The single-cell RNA-seq data and FUCCI imaging data were generated by the Gilad lab at the University of Chicago (see https://github.com/jdblischak/fucci-seq for details).
If you use our code, please attribute us as follows:
The code used to process the single-cell RNA-seq data was adapted from the code written by the Gilad lab and the Stephens lab at the University of Chicago (see https://github.com/jdblischak/fucci-seq for details).
For academic publications, please cite our published paper:
Hsiao CJ, Tung P, Blischak JD, Burnett JE, Barr KA, Dey KK, Stephens M, Gilad Y. Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis. Genome Research. Cold Spring Harbor Laboratory; 2020 Apr;30(4):611–621. Available from: http://dx.doi.org/10.1101/gr.247759.118
You can find a BibTeX entry for the above citation in CITATION.