Sequencing depth per C1 chip

Last updated: 2019-02-01

workflowr checks: (Click a bullet for more information)

✔ R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.
✔ Environment: empty

Great job! The global environment was empty. Objects defined in the global environment can affect the analysis in your R Markdown file in unknown ways. For reproduciblity it’s best to always run the code in an empty environment.
✔ Seed: set.seed(12345)

The command set.seed(12345) was run prior to running the code in the R Markdown file. Setting a seed ensures that any results that rely on randomness, e.g. subsampling or permutations, are reproducible.
✔ Session information: recorded

Great job! Recording the operating system, R version, and package versions is critical for reproducibility.

✔ Repository version: 5b3779c

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated:


Ignored files:
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    .snakemake/
    Ignored:    data/molecules/
    Ignored:    data/reads/
    Ignored:    data/totals/
    Ignored:    data/verify/
    Ignored:    log/
    Ignored:    slurm-46031744.out
    Ignored:    slurm-50622757.out
    Ignored:    slurm-50622948.out
    Ignored:    slurm-50622950.out
    Ignored:    slurm-50622951.out
    Ignored:    slurm-50622954.out
    Ignored:    slurm-50622956.out
    Ignored:    slurm-50622998.out
    Ignored:    slurm-50623000.out
    Ignored:    slurm-50623005.out
    Ignored:    slurm-50623025.out
    Ignored:    slurm-50623028.out
    Ignored:    slurm-50623029.out
    Ignored:    slurm-50623031.out
    Ignored:    slurm-50623033.out
    Ignored:    slurm-50623035.out
    Ignored:    slurm-50623037.out
    Ignored:    slurm-50623038.out
    Ignored:    slurm-50623040.out
    Ignored:    slurm-50623043.out
    Ignored:    slurm-50623045.out
    Ignored:    slurm-50623047.out
    Ignored:    slurm-50623048.out
    Ignored:    slurm-50623050.out
    Ignored:    slurm-50623051.out
    Ignored:    slurm-50623053.out
    Ignored:    slurm-50623055.out
    Ignored:    slurm-50623057.out
    Ignored:    slurm-50623059.out
    Ignored:    slurm-50623060.out
    Ignored:    slurm-50623062.out
    Ignored:    slurm-50623064.out
    Ignored:    slurm-50623066.out
    Ignored:    slurm-50623068.out
    Ignored:    slurm-50623069.out
    Ignored:    slurm-50623071.out
    Ignored:    slurm-50623073.out
    Ignored:    slurm-50623075.out
    Ignored:    slurm-50623077.out
    Ignored:    slurm-50623078.out
    Ignored:    slurm-50623080.out
    Ignored:    slurm-50623082.out
    Ignored:    slurm-50623084.out
    Ignored:    slurm-50623086.out
    Ignored:    slurm-50623088.out
    Ignored:    slurm-50623090.out
    Ignored:    slurm-50623092.out
    Ignored:    slurm-50623094.out
    Ignored:    slurm-50623095.out
    Ignored:    slurm-50623097.out
    Ignored:    slurm-50623100.out
    Ignored:    slurm-50623102.out
    Ignored:    slurm-50623103.out
    Ignored:    slurm-50623105.out
    Ignored:    slurm-50623107.out
    Ignored:    slurm-50623108.out
    Ignored:    slurm-50623110.out
    Ignored:    slurm-50623112.out
    Ignored:    slurm-50623114.out
    Ignored:    slurm-50623115.out
    Ignored:    slurm-50623123.out
    Ignored:    slurm-50623130.out
    Ignored:    slurm-50623143.out
    Ignored:    slurm-50623145.out
    Ignored:    slurm-50623146.out
    Ignored:    slurm-50623148.out
    Ignored:    slurm-50623150.out
    Ignored:    slurm-50623152.out
    Ignored:    slurm-50623154.out
    Ignored:    slurm-50623155.out
    Ignored:    slurm-50623157.out
    Ignored:    slurm-50623159.out
    Ignored:    slurm-50623161.out
    Ignored:    slurm-50623163.out
    Ignored:    slurm-50623165.out
    Ignored:    slurm-50623166.out
    Ignored:    slurm-50623168.out
    Ignored:    slurm-50623170.out
    Ignored:    slurm-50623172.out
    Ignored:    slurm-50623174.out
    Ignored:    slurm-50623175.out
    Ignored:    slurm-50623177.out
    Ignored:    slurm-50623179.out
    Ignored:    slurm-50623181.out
    Ignored:    slurm-50623182.out
    Ignored:    slurm-50623184.out
    Ignored:    slurm-50623186.out
    Ignored:    slurm-50623188.out
    Ignored:    slurm-50623190.out
    Ignored:    slurm-50623191.out
    Ignored:    slurm-50623194.out
    Ignored:    slurm-50623196.out
    Ignored:    slurm-50623197.out
    Ignored:    slurm-50623199.out
    Ignored:    slurm-50623201.out
    Ignored:    slurm-50623203.out
    Ignored:    slurm-50623204.out
    Ignored:    slurm-50623206.out
    Ignored:    slurm-50623208.out
    Ignored:    slurm-50623210.out
    Ignored:    slurm-50623212.out
    Ignored:    slurm-50623214.out
    Ignored:    slurm-50623216.out
    Ignored:    slurm-50623218.out
    Ignored:    slurm-50623219.out
    Ignored:    slurm-50623221.out
    Ignored:    slurm-50623223.out
    Ignored:    slurm-50623225.out
    Ignored:    slurm-50623227.out
    Ignored:    slurm-50623230.out
    Ignored:    slurm-50623232.out
    Ignored:    slurm-50623233.out
    Ignored:    slurm-50623236.out
    Ignored:    slurm-50623238.out
    Ignored:    slurm-50623240.out
    Ignored:    slurm-50623242.out
    Ignored:    slurm-50623244.out
    Ignored:    slurm-50623246.out
    Ignored:    slurm-50623247.out
    Ignored:    slurm-50623249.out
    Ignored:    slurm-50623251.out
    Ignored:    slurm-50623252.out
    Ignored:    slurm-50623254.out
    Ignored:    slurm-50623263.out
    Ignored:    slurm-50623266.out
    Ignored:    slurm-50623268.out
    Ignored:    slurm-50623269.out
    Ignored:    slurm-50623271.out
    Ignored:    slurm-50623273.out
    Ignored:    slurm-50623275.out
    Ignored:    slurm-50623277.out
    Ignored:    slurm-50623278.out
    Ignored:    slurm-50623281.out
    Ignored:    slurm-50623282.out
    Ignored:    slurm-50623284.out
    Ignored:    slurm-50623285.out
    Ignored:    slurm-50623287.out
    Ignored:    slurm-50623289.out
    Ignored:    slurm-50623291.out
    Ignored:    slurm-50623293.out
    Ignored:    slurm-50623295.out
    Ignored:    slurm-50623297.out
    Ignored:    slurm-50623299.out
    Ignored:    slurm-50623301.out
    Ignored:    slurm-50623302.out
    Ignored:    slurm-50623304.out
    Ignored:    slurm-50623306.out
    Ignored:    slurm-50623308.out
    Ignored:    slurm-50623310.out
    Ignored:    slurm-50623312.out
    Ignored:    slurm-50623314.out
    Ignored:    slurm-50623315.out
    Ignored:    slurm-50623317.out
    Ignored:    slurm-50623319.out
    Ignored:    slurm-50623321.out
    Ignored:    slurm-50623324.out
    Ignored:    slurm-50623325.out
    Ignored:    slurm-50623327.out
    Ignored:    slurm-50623329.out
    Ignored:    slurm-50623331.out
    Ignored:    slurm-50623333.out
    Ignored:    slurm-50623335.out
    Ignored:    slurm-50623336.out
    Ignored:    slurm-50623338.out
    Ignored:    slurm-50623341.out
    Ignored:    slurm-50623343.out
    Ignored:    slurm-50623345.out
    Ignored:    slurm-50623346.out
    Ignored:    slurm-50623349.out
    Ignored:    slurm-50623351.out
    Ignored:    slurm-50623354.out
    Ignored:    slurm-50623356.out
    Ignored:    slurm-50623358.out
    Ignored:    slurm-50623359.out
    Ignored:    slurm-50623361.out
    Ignored:    slurm-50623363.out
    Ignored:    slurm-50623365.out
    Ignored:    slurm-50623366.out
    Ignored:    slurm-50623368.out
    Ignored:    slurm-50623370.out
    Ignored:    slurm-50623372.out
    Ignored:    slurm-50623374.out
    Ignored:    slurm-50623376.out
    Ignored:    slurm-50623377.out
    Ignored:    slurm-50623379.out
    Ignored:    slurm-50623381.out
    Ignored:    slurm-50623384.out
    Ignored:    slurm-50623386.out
    Ignored:    slurm-50623387.out
    Ignored:    slurm-50623390.out
    Ignored:    slurm-50623393.out
    Ignored:    slurm-50623395.out
    Ignored:    slurm-50623397.out
    Ignored:    slurm-50623399.out
    Ignored:    slurm-50623401.out
    Ignored:    slurm-50623403.out
    Ignored:    slurm-50623405.out
    Ignored:    slurm-50623407.out
    Ignored:    slurm-50623409.out
    Ignored:    slurm-50623411.out
    Ignored:    slurm-50623412.out
    Ignored:    slurm-50623414.out
    Ignored:    slurm-50623415.out
    Ignored:    slurm-50623416.out
    Ignored:    slurm-50623418.out
    Ignored:    slurm-50623420.out
    Ignored:    slurm-50623422.out
    Ignored:    slurm-50623424.out
    Ignored:    slurm-50623426.out
    Ignored:    slurm-50623428.out
    Ignored:    slurm-50623430.out
    Ignored:    slurm-50623432.out
    Ignored:    slurm-50623433.out
    Ignored:    slurm-50623435.out
    Ignored:    slurm-50623437.out
    Ignored:    slurm-50623439.out
    Ignored:    slurm-50623441.out
    Ignored:    slurm-50623442.out
    Ignored:    slurm-50623444.out
    Ignored:    slurm-50623446.out
    Ignored:    slurm-50623448.out
    Ignored:    slurm-50623450.out
    Ignored:    slurm-50623451.out
    Ignored:    slurm-50623453.out
    Ignored:    slurm-50623455.out
    Ignored:    slurm-50623457.out
    Ignored:    slurm-50623459.out
    Ignored:    slurm-50623460.out
    Ignored:    slurm-50623462.out
    Ignored:    slurm-50623464.out
    Ignored:    slurm-50623466.out
    Ignored:    slurm-50623468.out
    Ignored:    slurm-50623470.out
    Ignored:    slurm-50623472.out
    Ignored:    slurm-50623473.out
    Ignored:    slurm-50623475.out
    Ignored:    slurm-50623477.out
    Ignored:    slurm-50623478.out
    Ignored:    slurm-50623480.out
    Ignored:    slurm-50623483.out
    Ignored:    slurm-50623484.out
    Ignored:    slurm-50623486.out
    Ignored:    slurm-50623489.out
    Ignored:    slurm-50623491.out
    Ignored:    slurm-50623494.out
    Ignored:    slurm-50623503.out
    Ignored:    slurm-50623527.out
    Ignored:    slurm-50623553.out
    Ignored:    slurm-50623572.out
    Ignored:    slurm-50623595.out
    Ignored:    slurm-50623613.out
    Ignored:    slurm-50623615.out
    Ignored:    slurm-50623616.out
    Ignored:    slurm-50623618.out
    Ignored:    slurm-50623620.out
    Ignored:    slurm-50623622.out
    Ignored:    slurm-50623623.out
    Ignored:    slurm-50623625.out
    Ignored:    slurm-50623627.out
    Ignored:    slurm-50623629.out
    Ignored:    slurm-50623631.out
    Ignored:    slurm-50623632.out
    Ignored:    slurm-50623634.out
    Ignored:    slurm-50623636.out
    Ignored:    slurm-50623638.out
    Ignored:    slurm-50623640.out
    Ignored:    slurm-50623641.out
    Ignored:    slurm-50623643.out
    Ignored:    slurm-50623645.out
    Ignored:    slurm-50623647.out
    Ignored:    slurm-50623649.out
    Ignored:    slurm-50623650.out
    Ignored:    slurm-50623652.out
    Ignored:    slurm-50623654.out
    Ignored:    slurm-50623657.out
    Ignored:    slurm-50623664.out
    Ignored:    slurm-50623667.out
    Ignored:    slurm-50623672.out
    Ignored:    slurm-50623677.out
    Ignored:    slurm-50623685.out
    Ignored:    slurm-50623689.out
    Ignored:    slurm-50623706.out
    Ignored:    slurm-50623729.out
    Ignored:    slurm-50623746.out
    Ignored:    slurm-50623766.out
    Ignored:    slurm-50623777.out
    Ignored:    slurm-50623778.out
    Ignored:    slurm-50623780.out
    Ignored:    slurm-50623782.out
    Ignored:    slurm-50623785.out
    Ignored:    slurm-50623787.out
    Ignored:    slurm-50623789.out
    Ignored:    slurm-50623790.out
    Ignored:    slurm-50623792.out
    Ignored:    slurm-50623794.out
    Ignored:    slurm-50623796.out
    Ignored:    slurm-50623798.out
    Ignored:    slurm-50623799.out
    Ignored:    slurm-50623801.out
    Ignored:    slurm-50623803.out
    Ignored:    slurm-50623805.out
    Ignored:    slurm-50623807.out
    Ignored:    slurm-50623809.out
    Ignored:    slurm-50623811.out
    Ignored:    slurm-50623813.out
    Ignored:    slurm-50623815.out
    Ignored:    slurm-50623817.out
    Ignored:    slurm-50623818.out
    Ignored:    slurm-50623820.out
    Ignored:    slurm-50623822.out
    Ignored:    slurm-50623823.out
    Ignored:    slurm-50623825.out
    Ignored:    slurm-50623827.out
    Ignored:    slurm-50623829.out
    Ignored:    slurm-50623831.out
    Ignored:    slurm-50623833.out
    Ignored:    slurm-50623835.out
    Ignored:    slurm-50623837.out
    Ignored:    slurm-50623839.out
    Ignored:    slurm-50623842.out
    Ignored:    slurm-50623844.out
    Ignored:    slurm-50623846.out
    Ignored:    slurm-50623849.out
    Ignored:    slurm-50623850.out
    Ignored:    slurm-50623855.out
    Ignored:    slurm-50623857.out
    Ignored:    slurm-50623859.out
    Ignored:    slurm-50623861.out
    Ignored:    slurm-50623862.out
    Ignored:    slurm-50623864.out
    Ignored:    slurm-50623866.out
    Ignored:    slurm-50623871.out
    Ignored:    slurm-50623971.out
    Ignored:    slurm-50623973.out
    Ignored:    slurm-50623975.out
    Ignored:    slurm-50623977.out
    Ignored:    slurm-50623978.out
    Ignored:    slurm-50623980.out
    Ignored:    slurm-50623982.out
    Ignored:    slurm-50623984.out
    Ignored:    slurm-50623986.out
    Ignored:    slurm-50623987.out
    Ignored:    slurm-50623989.out
    Ignored:    slurm-50623991.out
    Ignored:    slurm-50623993.out
    Ignored:    slurm-50623995.out
    Ignored:    slurm-50623998.out
    Ignored:    slurm-50623999.out
    Ignored:    slurm-50624000.out
    Ignored:    slurm-50624002.out
    Ignored:    slurm-50624003.out
    Ignored:    slurm-50624005.out
    Ignored:    slurm-50624007.out
    Ignored:    slurm-50624009.out
    Ignored:    slurm-50624011.out
    Ignored:    slurm-50624013.out
    Ignored:    slurm-50624015.out
    Ignored:    slurm-50624016.out
    Ignored:    slurm-50624018.out
    Ignored:    slurm-50624020.out
    Ignored:    slurm-50624022.out
    Ignored:    slurm-50624023.out
    Ignored:    slurm-50624025.out
    Ignored:    slurm-50624027.out
    Ignored:    slurm-50624029.out
    Ignored:    slurm-50624031.out
    Ignored:    slurm-50624033.out
    Ignored:    slurm-50624034.out
    Ignored:    slurm-50624036.out
    Ignored:    slurm-50624038.out
    Ignored:    slurm-50624040.out
    Ignored:    slurm-50624042.out
    Ignored:    slurm-50624044.out
    Ignored:    slurm-50624046.out
    Ignored:    slurm-50624048.out
    Ignored:    slurm-50624050.out
    Ignored:    slurm-50624051.out
    Ignored:    slurm-50624053.out
    Ignored:    slurm-50624055.out
    Ignored:    slurm-50624057.out
    Ignored:    slurm-50624058.out
    Ignored:    slurm-50624060.out
    Ignored:    slurm-50624061.out
    Ignored:    slurm-50624063.out
    Ignored:    slurm-50624064.out
    Ignored:    slurm-50624067.out
    Ignored:    slurm-50624070.out
    Ignored:    slurm-50624072.out
    Ignored:    slurm-50624075.out
    Ignored:    slurm-50624076.out
    Ignored:    slurm-50624079.out
    Ignored:    slurm-50624082.out
    Ignored:    slurm-50624084.out
    Ignored:    slurm-50624086.out
    Ignored:    slurm-50624089.out
    Ignored:    slurm-50624091.out
    Ignored:    slurm-50624093.out
    Ignored:    slurm-50624095.out
    Ignored:    slurm-50624097.out
    Ignored:    slurm-50624100.out
    Ignored:    slurm-50624103.out
    Ignored:    slurm-50624104.out
    Ignored:    slurm-50624106.out
    Ignored:    slurm-50624110.out
    Ignored:    slurm-50624112.out
    Ignored:    slurm-50624114.out
    Ignored:    slurm-50624116.out
    Ignored:    slurm-50624117.out
    Ignored:    slurm-50624120.out
    Ignored:    slurm-50624123.out
    Ignored:    slurm-50624125.out
    Ignored:    slurm-50624127.out
    Ignored:    slurm-50624130.out
    Ignored:    slurm-50624131.out
    Ignored:    slurm-50624133.out
    Ignored:    slurm-50624135.out
    Ignored:    slurm-50624136.out
    Ignored:    slurm-50624139.out
    Ignored:    slurm-50624143.out
    Ignored:    slurm-50624145.out
    Ignored:    slurm-50624147.out
    Ignored:    slurm-50624153.out
    Ignored:    slurm-50624156.out
    Ignored:    slurm-50624158.out
    Ignored:    slurm-50624162.out
    Ignored:    slurm-50624165.out
    Ignored:    slurm-50624167.out
    Ignored:    slurm-50624169.out
    Ignored:    slurm-50624173.out
    Ignored:    slurm-50624175.out
    Ignored:    slurm-50624177.out
    Ignored:    slurm-50624180.out
    Ignored:    slurm-50624182.out
    Ignored:    slurm-50624187.out
    Ignored:    slurm-50624188.out
    Ignored:    slurm-50624192.out
    Ignored:    slurm-50624196.out
    Ignored:    slurm-50624200.out
    Ignored:    slurm-50624203.out
    Ignored:    slurm-50624208.out
    Ignored:    slurm-50624211.out
    Ignored:    slurm-50624213.out
    Ignored:    slurm-50624215.out
    Ignored:    slurm-50624338.out
    Ignored:    slurm-50624341.out
    Ignored:    slurm-50624348.out
    Ignored:    slurm-50624351.out
    Ignored:    slurm-50624353.out
    Ignored:    slurm-50624355.out
    Ignored:    slurm-50624360.out
    Ignored:    slurm-50624362.out
    Ignored:    slurm-50624370.out
    Ignored:    slurm-50624376.out
    Ignored:    slurm-50624378.out
    Ignored:    slurm-50624382.out
    Ignored:    slurm-50624390.out
    Ignored:    slurm-50624392.out
    Ignored:    slurm-50624396.out
    Ignored:    slurm-50624399.out
    Ignored:    slurm-50624402.out
    Ignored:    slurm-50624404.out
    Ignored:    slurm-50624405.out
    Ignored:    slurm-50624408.out
    Ignored:    slurm-50624410.out
    Ignored:    slurm-50624412.out
    Ignored:    slurm-50624415.out
    Ignored:    slurm-50624417.out
    Ignored:    slurm-50624419.out
    Ignored:    slurm-50624421.out
    Ignored:    slurm-50624423.out
    Ignored:    slurm-50624427.out
    Ignored:    slurm-50624430.out
    Ignored:    slurm-50624433.out
    Ignored:    slurm-50624436.out
    Ignored:    slurm-50624440.out
    Ignored:    slurm-50624444.out
    Ignored:    slurm-50624446.out
    Ignored:    slurm-50624449.out
    Ignored:    slurm-50624451.out
    Ignored:    slurm-50624454.out
    Ignored:    slurm-50624455.out
    Ignored:    slurm-50624458.out
    Ignored:    slurm-50624461.out
    Ignored:    slurm-50624469.out
    Ignored:    slurm-50624471.out
    Ignored:    slurm-50624472.out
    Ignored:    slurm-50624478.out
    Ignored:    slurm-50624479.out
    Ignored:    slurm-50624481.out
    Ignored:    slurm-50624485.out
    Ignored:    slurm-50624489.out
    Ignored:    slurm-50624491.out
    Ignored:    slurm-50624493.out
    Ignored:    slurm-50624495.out
    Ignored:    slurm-50624497.out
    Ignored:    slurm-50624498.out
    Ignored:    slurm-50624500.out
    Ignored:    slurm-50624503.out
    Ignored:    slurm-50624507.out
    Ignored:    slurm-50624509.out
    Ignored:    slurm-50624511.out
    Ignored:    slurm-50624516.out
    Ignored:    slurm-50624518.out
    Ignored:    slurm-50624519.out
    Ignored:    slurm-50624522.out
    Ignored:    slurm-50624523.out
    Ignored:    slurm-50624526.out
    Ignored:    slurm-50624527.out
    Ignored:    slurm-50624531.out
    Ignored:    slurm-50624537.out
    Ignored:    slurm-50624539.out
    Ignored:    slurm-50624541.out
    Ignored:    slurm-50624544.out
    Ignored:    slurm-50624546.out
    Ignored:    slurm-50624548.out
    Ignored:    slurm-50624551.out
    Ignored:    slurm-50624554.out
    Ignored:    slurm-50624556.out
    Ignored:    slurm-50624558.out
    Ignored:    slurm-50624561.out
    Ignored:    slurm-50624564.out
    Ignored:    slurm-50624566.out
    Ignored:    slurm-50624567.out
    Ignored:    slurm-50624569.out
    Ignored:    slurm-50624571.out
    Ignored:    slurm-50624573.out
    Ignored:    slurm-50624575.out
    Ignored:    slurm-50624577.out
    Ignored:    slurm-50624581.out
    Ignored:    slurm-50624582.out
    Ignored:    slurm-50624584.out
    Ignored:    slurm-50624586.out
    Ignored:    slurm-50624588.out
    Ignored:    slurm-50624591.out
    Ignored:    slurm-50624594.out
    Ignored:    slurm-50624598.out
    Ignored:    slurm-50624599.out
    Ignored:    slurm-50624605.out
    Ignored:    slurm-50624609.out
    Ignored:    slurm-50624612.out
    Ignored:    slurm-50624613.out
    Ignored:    slurm-50624615.out
    Ignored:    slurm-50624618.out
    Ignored:    slurm-50624621.out
    Ignored:    slurm-50624623.out
    Ignored:    slurm-50624626.out
    Ignored:    slurm-50624628.out
    Ignored:    slurm-50624630.out
    Ignored:    slurm-50624632.out
    Ignored:    slurm-50624633.out
    Ignored:    slurm-50624635.out
    Ignored:    slurm-50624637.out
    Ignored:    slurm-50624639.out
    Ignored:    slurm-50624641.out
    Ignored:    slurm-50624642.out
    Ignored:    slurm-50624645.out
    Ignored:    slurm-50624648.out
    Ignored:    slurm-50624651.out
    Ignored:    slurm-50624653.out
    Ignored:    slurm-50624656.out
    Ignored:    slurm-50624659.out
    Ignored:    slurm-50624661.out
    Ignored:    slurm-50624664.out
    Ignored:    slurm-50624667.out
    Ignored:    slurm-50624688.out
    Ignored:    slurm-50624692.out
    Ignored:    slurm-50624695.out
    Ignored:    slurm-50624701.out
    Ignored:    slurm-50624705.out
    Ignored:    slurm-50624714.out
    Ignored:    slurm-50624729.out
    Ignored:    slurm-50624733.out
    Ignored:    slurm-50624734.out
    Ignored:    slurm-50624742.out
    Ignored:    slurm-50624746.out
    Ignored:    slurm-50624762.out
    Ignored:    slurm-50624783.out
    Ignored:    slurm-50624805.out
    Ignored:    slurm-50624809.out
    Ignored:    slurm-50624812.out
    Ignored:    slurm-50624815.out
    Ignored:    slurm-50624818.out
    Ignored:    slurm-50624820.out
    Ignored:    slurm-50624822.out
    Ignored:    slurm-50624823.out
    Ignored:    slurm-50624825.out
    Ignored:    slurm-50624827.out
    Ignored:    slurm-50624829.out
    Ignored:    slurm-50624831.out
    Ignored:    slurm-50624834.out
    Ignored:    slurm-50624837.out
    Ignored:    slurm-50624838.out
    Ignored:    slurm-50624840.out
    Ignored:    slurm-50624842.out
    Ignored:    slurm-50624846.out
    Ignored:    slurm-50624850.out
    Ignored:    slurm-50624852.out
    Ignored:    slurm-50624854.out
    Ignored:    slurm-50624855.out
    Ignored:    slurm-50624858.out
    Ignored:    slurm-50624859.out
    Ignored:    slurm-50624860.out
    Ignored:    slurm-50624862.out
    Ignored:    slurm-50624866.out
    Ignored:    slurm-50624868.out
    Ignored:    slurm-50624870.out
    Ignored:    slurm-50624872.out
    Ignored:    slurm-50624874.out
    Ignored:    slurm-50624876.out
    Ignored:    slurm-50624878.out
    Ignored:    slurm-50624880.out
    Ignored:    slurm-50624882.out
    Ignored:    slurm-50624884.out
    Ignored:    slurm-50624887.out
    Ignored:    slurm-50624888.out
    Ignored:    slurm-50624890.out
    Ignored:    slurm-50624892.out
    Ignored:    slurm-50624894.out
    Ignored:    slurm-50624896.out
    Ignored:    slurm-50624898.out
    Ignored:    slurm-50624899.out
    Ignored:    slurm-50624901.out
    Ignored:    slurm-50624903.out
    Ignored:    slurm-50624905.out
    Ignored:    slurm-50624907.out
    Ignored:    slurm-50624909.out
    Ignored:    slurm-50624911.out
    Ignored:    slurm-50624913.out
    Ignored:    slurm-50624916.out
    Ignored:    slurm-50624918.out
    Ignored:    slurm-50624921.out
    Ignored:    slurm-50624922.out
    Ignored:    slurm-50624925.out
    Ignored:    slurm-50624927.out
    Ignored:    slurm-50624930.out
    Ignored:    slurm-50624932.out
    Ignored:    slurm-50624933.out
    Ignored:    slurm-50624935.out
    Ignored:    slurm-50624937.out
    Ignored:    slurm-50624939.out
    Ignored:    slurm-50624942.out
    Ignored:    slurm-50624943.out
    Ignored:    slurm-50624945.out
    Ignored:    slurm-50624947.out
    Ignored:    slurm-50624949.out
    Ignored:    slurm-50624950.out
    Ignored:    slurm-50624952.out
    Ignored:    slurm-50624955.out
    Ignored:    slurm-50624957.out
    Ignored:    slurm-50624959.out
    Ignored:    slurm-50624961.out
    Ignored:    slurm-50624963.out
    Ignored:    slurm-50624966.out
    Ignored:    slurm-50624967.out
    Ignored:    slurm-50624969.out
    Ignored:    slurm-50624970.out
    Ignored:    slurm-50624971.out
    Ignored:    slurm-50624973.out
    Ignored:    slurm-50624974.out
    Ignored:    slurm-50624976.out
    Ignored:    slurm-50624978.out
    Ignored:    slurm-50624980.out
    Ignored:    slurm-50624981.out
    Ignored:    slurm-50624983.out
    Ignored:    slurm-50624985.out
    Ignored:    slurm-50624988.out
    Ignored:    slurm-50624990.out
    Ignored:    slurm-50624991.out
    Ignored:    slurm-50624993.out
    Ignored:    slurm-50624995.out
    Ignored:    slurm-50624997.out
    Ignored:    slurm-50624999.out
    Ignored:    slurm-50625000.out
    Ignored:    slurm-50625003.out
    Ignored:    slurm-50625005.out
    Ignored:    slurm-50625007.out
    Ignored:    slurm-50625009.out
    Ignored:    slurm-50625012.out
    Ignored:    slurm-50625013.out
    Ignored:    slurm-50625015.out
    Ignored:    slurm-50625017.out
    Ignored:    slurm-50625019.out
    Ignored:    slurm-50625021.out
    Ignored:    slurm-50625022.out
    Ignored:    slurm-50625026.out
    Ignored:    slurm-50625030.out
    Ignored:    slurm-50625037.out
    Ignored:    slurm-50625040.out
    Ignored:    slurm-50625054.out
    Ignored:    slurm-50625084.out
    Ignored:    slurm-50625117.out
    Ignored:    slurm-50625132.out
    Ignored:    slurm-50625146.out
    Ignored:    slurm-50625159.out
    Ignored:    slurm-50625173.out
    Ignored:    slurm-50625188.out
    Ignored:    slurm-50625204.out
    Ignored:    slurm-50625218.out
    Ignored:    slurm-50625231.out
    Ignored:    slurm-50625245.out
    Ignored:    slurm-50625254.out
    Ignored:    slurm-50625268.out
    Ignored:    slurm-50625282.out
    Ignored:    slurm-50625294.out
    Ignored:    slurm-50625307.out
    Ignored:    slurm-50625322.out
    Ignored:    slurm-50625326.out
    Ignored:    slurm-50625335.out
    Ignored:    slurm-50625345.out
    Ignored:    slurm-50625346.out
    Ignored:    slurm-50625349.out
    Ignored:    slurm-50625352.out
    Ignored:    slurm-50625353.out
    Ignored:    slurm-50625360.out
    Ignored:    slurm-50625363.out
    Ignored:    slurm-50625369.out
    Ignored:    slurm-50625379.out
    Ignored:    slurm-50625391.out
    Ignored:    slurm-50625403.out
    Ignored:    slurm-50625417.out
    Ignored:    slurm-50625426.out
    Ignored:    slurm-50625437.out
    Ignored:    slurm-50625446.out
    Ignored:    slurm-50625479.out
    Ignored:    slurm-50625496.out
    Ignored:    slurm-50625516.out
    Ignored:    slurm-50625517.out
    Ignored:    slurm-50625533.out
    Ignored:    slurm-50625569.out
    Ignored:    slurm-50625599.out
    Ignored:    slurm-50625626.out
    Ignored:    slurm-50625630.out
    Ignored:    slurm-50625641.out
    Ignored:    slurm-50625646.out
    Ignored:    slurm-50625647.out
    Ignored:    slurm-50625651.out
    Ignored:    slurm-50625657.out
    Ignored:    slurm-50625662.out
    Ignored:    slurm-50625663.out
    Ignored:    slurm-50625667.out
    Ignored:    slurm-50625674.out
    Ignored:    slurm-50625678.out
    Ignored:    slurm-50625690.out
    Ignored:    slurm-50625695.out
    Ignored:    slurm-50625699.out
    Ignored:    slurm-50625700.out
    Ignored:    slurm-50625702.out
    Ignored:    slurm-50625705.out
    Ignored:    slurm-50625707.out
    Ignored:    slurm-50625710.out
    Ignored:    slurm-50625712.out
    Ignored:    slurm-50625714.out
    Ignored:    slurm-50625716.out
    Ignored:    slurm-50625718.out
    Ignored:    slurm-50625720.out
    Ignored:    slurm-50625721.out
    Ignored:    slurm-50625723.out
    Ignored:    slurm-50625726.out
    Ignored:    slurm-50625727.out
    Ignored:    slurm-50625729.out
    Ignored:    slurm-50625731.out
    Ignored:    slurm-50625732.out
    Ignored:    slurm-50625734.out
    Ignored:    slurm-50625735.out
    Ignored:    slurm-50625739.out
    Ignored:    slurm-50625741.out
    Ignored:    slurm-50625745.out
    Ignored:    slurm-50625747.out
    Ignored:    slurm-50625749.out
    Ignored:    slurm-50625751.out
    Ignored:    slurm-50625754.out
    Ignored:    slurm-50625756.out
    Ignored:    slurm-50625758.out
    Ignored:    slurm-50625759.out
    Ignored:    slurm-50625761.out
    Ignored:    slurm-50625763.out
    Ignored:    slurm-50625765.out
    Ignored:    slurm-50625766.out
    Ignored:    slurm-50625768.out
    Ignored:    slurm-50625769.out
    Ignored:    slurm-50625770.out
    Ignored:    slurm-50625772.out
    Ignored:    slurm-50625774.out
    Ignored:    slurm-50625775.out
    Ignored:    slurm-50625777.out
    Ignored:    slurm-50625778.out
    Ignored:    slurm-50625779.out
    Ignored:    slurm-50625781.out
    Ignored:    slurm-50625783.out
    Ignored:    slurm-50625785.out
    Ignored:    slurm-50625787.out
    Ignored:    slurm-50625788.out
    Ignored:    slurm-50625790.out
    Ignored:    slurm-50625792.out
    Ignored:    slurm-50625794.out
    Ignored:    slurm-50625795.out
    Ignored:    slurm-50625797.out
    Ignored:    slurm-50625799.out
    Ignored:    slurm-50625801.out
    Ignored:    slurm-50625803.out
    Ignored:    slurm-50625805.out
    Ignored:    slurm-50625807.out
    Ignored:    slurm-50625928.out
    Ignored:    slurm-50625930.out
    Ignored:    slurm-50625931.out
    Ignored:    slurm-50625934.out
    Ignored:    slurm-50625935.out
    Ignored:    slurm-50625937.out
    Ignored:    slurm-50625939.out
    Ignored:    slurm-50625941.out
    Ignored:    slurm-50625942.out
    Ignored:    slurm-50625944.out
    Ignored:    slurm-50625946.out
    Ignored:    slurm-50625948.out
    Ignored:    slurm-50625950.out
    Ignored:    slurm-50625952.out
    Ignored:    slurm-50625954.out
    Ignored:    slurm-50625955.out
    Ignored:    slurm-50625957.out
    Ignored:    slurm-50625959.out
    Ignored:    slurm-50625961.out
    Ignored:    slurm-50625963.out
    Ignored:    slurm-50625966.out
    Ignored:    slurm-50625968.out
    Ignored:    slurm-50625971.out
    Ignored:    slurm-50625972.out
    Ignored:    slurm-50625974.out
    Ignored:    slurm-50625976.out
    Ignored:    slurm-50625977.out
    Ignored:    slurm-50625979.out
    Ignored:    slurm-50625980.out
    Ignored:    slurm-50625982.out
    Ignored:    slurm-50625983.out
    Ignored:    slurm-50625985.out
    Ignored:    slurm-50625987.out
    Ignored:    slurm-50625989.out
    Ignored:    slurm-50625990.out
    Ignored:    slurm-50625993.out
    Ignored:    slurm-50625994.out
    Ignored:    slurm-50625996.out
    Ignored:    slurm-50625997.out
    Ignored:    slurm-50625999.out
    Ignored:    slurm-50626001.out
    Ignored:    slurm-50626003.out
    Ignored:    slurm-50626005.out
    Ignored:    slurm-50626006.out
    Ignored:    slurm-50626008.out
    Ignored:    slurm-50626010.out
    Ignored:    slurm-50626012.out
    Ignored:    slurm-50626014.out
    Ignored:    slurm-50626016.out
    Ignored:    slurm-50626018.out
    Ignored:    slurm-50626019.out
    Ignored:    slurm-50626021.out
    Ignored:    slurm-50626022.out
    Ignored:    slurm-50626023.out
    Ignored:    slurm-50626025.out
    Ignored:    slurm-50626026.out
    Ignored:    slurm-50626030.out
    Ignored:    slurm-50626031.out
    Ignored:    slurm-50626033.out
    Ignored:    slurm-50626035.out
    Ignored:    slurm-50626037.out
    Ignored:    slurm-50626039.out
    Ignored:    slurm-50626041.out
    Ignored:    slurm-50626043.out
    Ignored:    slurm-50626045.out
    Ignored:    slurm-50626047.out
    Ignored:    slurm-50626051.out
    Ignored:    slurm-50626053.out
    Ignored:    slurm-50626055.out
    Ignored:    slurm-50626056.out
    Ignored:    slurm-50626058.out
    Ignored:    slurm-50626060.out
    Ignored:    slurm-50626062.out
    Ignored:    slurm-50626064.out
    Ignored:    slurm-50626066.out
    Ignored:    slurm-50626068.out
    Ignored:    slurm-50626070.out
    Ignored:    slurm-50626071.out
    Ignored:    slurm-50626073.out
    Ignored:    slurm-50626074.out
    Ignored:    slurm-50626077.out
    Ignored:    slurm-50626080.out
    Ignored:    slurm-50626082.out
    Ignored:    slurm-50626084.out
    Ignored:    slurm-50626087.out
    Ignored:    slurm-50626088.out
    Ignored:    slurm-50626091.out
    Ignored:    slurm-50626096.out
    Ignored:    slurm-50626099.out
    Ignored:    slurm-50626107.out
    Ignored:    slurm-50626114.out
    Ignored:    slurm-50626122.out
    Ignored:    slurm-50626128.out
    Ignored:    slurm-50626135.out
    Ignored:    slurm-50626141.out
    Ignored:    slurm-50626150.out
    Ignored:    slurm-50626158.out
    Ignored:    slurm-50626161.out
    Ignored:    slurm-50626172.out
    Ignored:    slurm-50626180.out
    Ignored:    slurm-50626189.out
    Ignored:    slurm-50626197.out
    Ignored:    slurm-50626206.out
    Ignored:    slurm-50626210.out
    Ignored:    slurm-50626217.out
    Ignored:    slurm-50626219.out
    Ignored:    slurm-50626222.out
    Ignored:    slurm-50626224.out
    Ignored:    slurm-50626229.out
    Ignored:    slurm-50626232.out
    Ignored:    slurm-50626237.out
    Ignored:    slurm-50626244.out
    Ignored:    slurm-50626247.out
    Ignored:    slurm-50626251.out
    Ignored:    slurm-50626254.out
    Ignored:    slurm-50626264.out
    Ignored:    slurm-50626272.out
    Ignored:    slurm-50626280.out
    Ignored:    slurm-50626289.out
    Ignored:    slurm-50626296.out
    Ignored:    slurm-50626304.out
    Ignored:    slurm-50626313.out
    Ignored:    slurm-50626321.out
    Ignored:    slurm-50626323.out
    Ignored:    slurm-50626331.out
    Ignored:    slurm-50626338.out
    Ignored:    slurm-50626344.out
    Ignored:    slurm-50626354.out
    Ignored:    slurm-50626362.out
    Ignored:    slurm-50626370.out
    Ignored:    slurm-50626376.out
    Ignored:    slurm-50626378.out
    Ignored:    slurm-50626380.out
    Ignored:    slurm-50626382.out
    Ignored:    slurm-50626385.out
    Ignored:    slurm-50626389.out
    Ignored:    slurm-50626396.out
    Ignored:    slurm-50626404.out
    Ignored:    slurm-50626406.out
    Ignored:    slurm-50626409.out
    Ignored:    slurm-50626413.out
    Ignored:    slurm-50626421.out
    Ignored:    slurm-50626429.out
    Ignored:    slurm-50626434.out
    Ignored:    slurm-50626437.out
    Ignored:    slurm-50626444.out
    Ignored:    slurm-50626453.out
    Ignored:    slurm-50626462.out
    Ignored:    slurm-50626470.out
    Ignored:    slurm-50626476.out
    Ignored:    slurm-50626477.out
    Ignored:    slurm-50626479.out
    Ignored:    slurm-50626481.out
    Ignored:    slurm-50626482.out
    Ignored:    slurm-50626483.out
    Ignored:    slurm-50626488.out
    Ignored:    slurm-50626490.out
    Ignored:    slurm-50626493.out
    Ignored:    slurm-50626500.out
    Ignored:    slurm-50626507.out
    Ignored:    slurm-50626516.out
    Ignored:    slurm-50626523.out
    Ignored:    slurm-50626530.out
    Ignored:    slurm-50626537.out
    Ignored:    slurm-50626543.out
    Ignored:    slurm-50626545.out
    Ignored:    slurm-50626553.out
    Ignored:    slurm-50626561.out
    Ignored:    slurm-50626570.out
    Ignored:    slurm-50626578.out
    Ignored:    slurm-50626587.out
    Ignored:    slurm-50626591.out
    Ignored:    slurm-50626599.out
    Ignored:    slurm-50626605.out
    Ignored:    slurm-50626611.out
    Ignored:    slurm-50626613.out
    Ignored:    slurm-50626614.out
    Ignored:    slurm-50626616.out
    Ignored:    slurm-50626621.out
    Ignored:    slurm-50626624.out
    Ignored:    slurm-50626627.out
    Ignored:    slurm-50626630.out
    Ignored:    slurm-50626638.out
    Ignored:    slurm-50626643.out
    Ignored:    slurm-50626652.out
    Ignored:    slurm-50626660.out
    Ignored:    slurm-50626669.out
    Ignored:    slurm-50626677.out
    Ignored:    slurm-50626685.out
    Ignored:    slurm-50626693.out
    Ignored:    slurm-50626701.out
    Ignored:    slurm-50626710.out
    Ignored:    slurm-50626719.out
    Ignored:    slurm-50626727.out
    Ignored:    slurm-50626735.out
    Ignored:    slurm-50626738.out
    Ignored:    slurm-50626740.out
    Ignored:    slurm-50626742.out
    Ignored:    slurm-50626745.out
    Ignored:    slurm-50626747.out
    Ignored:    slurm-50626749.out
    Ignored:    slurm-50626751.out
    Ignored:    slurm-50626753.out
    Ignored:    slurm-50626755.out
    Ignored:    slurm-50626756.out
    Ignored:    slurm-50626759.out
    Ignored:    slurm-50626760.out
    Ignored:    slurm-50626762.out
    Ignored:    slurm-50626763.out
    Ignored:    slurm-50626765.out
    Ignored:    slurm-50626766.out
    Ignored:    slurm-50626768.out
    Ignored:    slurm-50626770.out
    Ignored:    slurm-50626773.out
    Ignored:    slurm-50626774.out
    Ignored:    slurm-50626775.out
    Ignored:    slurm-50626777.out
    Ignored:    slurm-50626779.out
    Ignored:    slurm-50626781.out
    Ignored:    slurm-50626784.out
    Ignored:    slurm-50626786.out
    Ignored:    slurm-50626788.out
    Ignored:    slurm-50626790.out
    Ignored:    slurm-50626792.out
    Ignored:    slurm-50626793.out
    Ignored:    slurm-50626795.out
    Ignored:    slurm-50626797.out
    Ignored:    slurm-50626799.out
    Ignored:    slurm-50626801.out
    Ignored:    slurm-50626803.out
    Ignored:    slurm-50626804.out
    Ignored:    slurm-50626809.out
    Ignored:    slurm-50626813.out
    Ignored:    slurm-50626815.out
    Ignored:    slurm-50626820.out
    Ignored:    slurm-50626823.out
    Ignored:    slurm-50626832.out
    Ignored:    slurm-50626844.out
    Ignored:    slurm-50626857.out
    Ignored:    slurm-50626866.out
    Ignored:    slurm-50626870.out
    Ignored:    slurm-50626879.out
    Ignored:    slurm-50626887.out
    Ignored:    slurm-50626898.out
    Ignored:    slurm-50626908.out
    Ignored:    slurm-50626920.out
    Ignored:    slurm-50626930.out
    Ignored:    slurm-50626935.out
    Ignored:    slurm-50626945.out
    Ignored:    slurm-50626956.out
    Ignored:    slurm-50626969.out
    Ignored:    slurm-50626980.out
    Ignored:    slurm-50626993.out
    Ignored:    slurm-50626997.out
    Ignored:    slurm-50627007.out
    Ignored:    slurm-50627011.out
    Ignored:    slurm-50627014.out
    Ignored:    slurm-50627017.out
    Ignored:    slurm-50627019.out
    Ignored:    slurm-50627022.out
    Ignored:    slurm-50627033.out
    Ignored:    slurm-50627041.out
    Ignored:    slurm-50627043.out
    Ignored:    slurm-50627047.out
    Ignored:    slurm-50627056.out
    Ignored:    slurm-50627057.out
    Ignored:    slurm-50627060.out
    Ignored:    slurm-50627073.out
    Ignored:    slurm-50627079.out
    Ignored:    slurm-50627091.out
    Ignored:    slurm-50627099.out
    Ignored:    slurm-50627110.out
    Ignored:    slurm-50627116.out
    Ignored:    slurm-50627122.out
    Ignored:    slurm-50627131.out
    Ignored:    slurm-50627143.out
    Ignored:    slurm-50627151.out
    Ignored:    slurm-50627162.out
    Ignored:    slurm-50627174.out
    Ignored:    slurm-50627176.out
    Ignored:    slurm-50627178.out
    Ignored:    slurm-50627181.out
    Ignored:    slurm-50627183.out
    Ignored:    slurm-50627187.out
    Ignored:    slurm-50627188.out
    Ignored:    slurm-50627192.out
    Ignored:    slurm-50627199.out
    Ignored:    slurm-50627210.out
    Ignored:    slurm-50627217.out
    Ignored:    slurm-50627234.out
    Ignored:    slurm-50627244.out
    Ignored:    slurm-50627260.out
    Ignored:    slurm-50627280.out
    Ignored:    slurm-50627303.out
    Ignored:    slurm-50627325.out
    Ignored:    slurm-50627336.out
    Ignored:    slurm-50627365.out
    Ignored:    slurm-50627392.out
    Ignored:    slurm-50627399.out
    Ignored:    slurm-50627412.out
    Ignored:    slurm-50627423.out
    Ignored:    slurm-50627428.out
    Ignored:    slurm-50627440.out
    Ignored:    slurm-50627449.out
    Ignored:    slurm-50627453.out
    Ignored:    slurm-50627455.out
    Ignored:    slurm-50627459.out
    Ignored:    slurm-50627467.out
    Ignored:    slurm-50627477.out
    Ignored:    slurm-50627485.out
    Ignored:    slurm-50627490.out
    Ignored:    slurm-50627493.out
    Ignored:    slurm-50627497.out
    Ignored:    slurm-50627508.out
    Ignored:    slurm-50627514.out
    Ignored:    slurm-50627522.out
    Ignored:    slurm-50627525.out
    Ignored:    slurm-50627533.out
    Ignored:    slurm-50627540.out
    Ignored:    slurm-50627542.out
    Ignored:    slurm-50627544.out
    Ignored:    slurm-50627545.out
    Ignored:    slurm-50627547.out
    Ignored:    slurm-50627549.out
    Ignored:    slurm-50627551.out
    Ignored:    slurm-50627553.out
    Ignored:    slurm-50627554.out
    Ignored:    slurm-50627556.out
    Ignored:    slurm-50627578.out
    Ignored:    slurm-50627580.out
    Ignored:    slurm-50627584.out
    Ignored:    slurm-50627586.out
    Ignored:    slurm-50627588.out
    Ignored:    slurm-50627590.out
    Ignored:    slurm-50627593.out
    Ignored:    slurm-50627595.out
    Ignored:    slurm-50627597.out
    Ignored:    slurm-50627599.out
    Ignored:    slurm-50627601.out
    Ignored:    slurm-50627603.out
    Ignored:    slurm-50627605.out
    Ignored:    slurm-50627606.out
    Ignored:    slurm-50627708.out
    Ignored:    slurm-50627711.out
    Ignored:    slurm-50627714.out
    Ignored:    slurm-50627715.out
    Ignored:    slurm-50627717.out
    Ignored:    slurm-50627718.out
    Ignored:    slurm-50627720.out
    Ignored:    slurm-50627722.out
    Ignored:    slurm-50627724.out
    Ignored:    slurm-50627726.out
    Ignored:    slurm-50627728.out
    Ignored:    slurm-50627730.out
    Ignored:    slurm-50627731.out
    Ignored:    slurm-50627733.out
    Ignored:    slurm-50627735.out
    Ignored:    slurm-50627737.out
    Ignored:    slurm-50627739.out
    Ignored:    slurm-50627740.out
    Ignored:    slurm-50627742.out
    Ignored:    slurm-50627744.out
    Ignored:    slurm-50627746.out
    Ignored:    slurm-50627748.out
    Ignored:    slurm-50627750.out
    Ignored:    slurm-50627752.out
    Ignored:    slurm-50627755.out
    Ignored:    slurm-50627757.out
    Ignored:    slurm-50627760.out
    Ignored:    slurm-50627762.out
    Ignored:    slurm-50627764.out
    Ignored:    slurm-50627765.out
    Ignored:    slurm-50627766.out
    Ignored:    slurm-50627768.out
    Ignored:    slurm-50627770.out
    Ignored:    slurm-50627773.out
    Ignored:    slurm-50627775.out
    Ignored:    slurm-50627784.out
    Ignored:    slurm-50627790.out
    Ignored:    slurm-50627798.out
    Ignored:    slurm-50627807.out
    Ignored:    slurm-50627815.out
    Ignored:    slurm-50627824.out
    Ignored:    slurm-50627833.out
    Ignored:    slurm-50627843.out
    Ignored:    slurm-50627851.out
    Ignored:    slurm-50627858.out
    Ignored:    slurm-50627867.out
    Ignored:    slurm-50627873.out
    Ignored:    slurm-50627881.out
    Ignored:    slurm-50627886.out
    Ignored:    slurm-50627889.out
    Ignored:    slurm-50627895.out
    Ignored:    slurm-50627904.out
    Ignored:    slurm-50627907.out
    Ignored:    slurm-50627909.out
    Ignored:    slurm-50627911.out
    Ignored:    slurm-50627915.out
    Ignored:    slurm-50627916.out
    Ignored:    slurm-50627918.out
    Ignored:    slurm-50627922.out
    Ignored:    slurm-50627928.out
    Ignored:    slurm-50627951.out
    Ignored:    slurm-50627976.out
    Ignored:    slurm-50627995.out
    Ignored:    slurm-50628022.out
    Ignored:    slurm-50628045.out
    Ignored:    slurm-50628067.out
    Ignored:    slurm-50628081.out
    Ignored:    slurm-50628089.out
    Ignored:    slurm-50628099.out
    Ignored:    slurm-50628106.out
    Ignored:    slurm-50628112.out
    Ignored:    slurm-50628121.out
    Ignored:    slurm-50628129.out
    Ignored:    slurm-50628135.out
    Ignored:    slurm-50628144.out
    Ignored:    slurm-50628152.out
    Ignored:    slurm-50628159.out
    Ignored:    slurm-50628168.out
    Ignored:    slurm-50628176.out
    Ignored:    slurm-50628184.out
    Ignored:    slurm-50628189.out
    Ignored:    slurm-50628191.out
    Ignored:    slurm-50628196.out
    Ignored:    slurm-50628199.out
    Ignored:    slurm-50628201.out
    Ignored:    slurm-50628204.out
    Ignored:    slurm-50628207.out
    Ignored:    slurm-50628212.out
    Ignored:    slurm-50628221.out
    Ignored:    slurm-50628226.out
    Ignored:    slurm-50628227.out
    Ignored:    slurm-50628232.out
    Ignored:    slurm-50628240.out
    Ignored:    slurm-50628249.out
    Ignored:    slurm-50628257.out
    Ignored:    slurm-50628264.out
    Ignored:    slurm-50628273.out
    Ignored:    slurm-50628280.out
    Ignored:    slurm-50628289.out
    Ignored:    slurm-50628297.out
    Ignored:    slurm-50628305.out
    Ignored:    slurm-50628311.out
    Ignored:    slurm-50628320.out
    Ignored:    slurm-50628328.out
    Ignored:    slurm-50628336.out
    Ignored:    slurm-50628344.out
    Ignored:    slurm-50628348.out
    Ignored:    slurm-50628353.out
    Ignored:    slurm-50628357.out
    Ignored:    slurm-50628358.out
    Ignored:    slurm-50628359.out
    Ignored:    slurm-50628361.out
    Ignored:    slurm-50628364.out
    Ignored:    slurm-50628366.out
    Ignored:    slurm-50628369.out
    Ignored:    slurm-50628374.out
    Ignored:    slurm-50628377.out
    Ignored:    slurm-50628382.out
    Ignored:    slurm-50628387.out
    Ignored:    slurm-50628396.out
    Ignored:    slurm-50628400.out
    Ignored:    slurm-50628408.out
    Ignored:    slurm-50628416.out
    Ignored:    slurm-50628425.out
    Ignored:    slurm-50628434.out
    Ignored:    slurm-50628443.out
    Ignored:    slurm-50628451.out
    Ignored:    slurm-50628460.out
    Ignored:    slurm-50628469.out
    Ignored:    slurm-50628477.out
    Ignored:    slurm-50628485.out
    Ignored:    slurm-50628493.out
    Ignored:    slurm-50628501.out
    Ignored:    slurm-50628508.out
    Ignored:    slurm-50628514.out
    Ignored:    slurm-50628516.out
    Ignored:    slurm-50628519.out
    Ignored:    slurm-50628522.out
    Ignored:    slurm-50628523.out
    Ignored:    slurm-50628527.out
    Ignored:    slurm-50628528.out
    Ignored:    slurm-50628534.out
    Ignored:    slurm-50628536.out
    Ignored:    slurm-50628537.out
    Ignored:    slurm-50628539.out
    Ignored:    slurm-50628541.out
    Ignored:    slurm-50628543.out
    Ignored:    slurm-50628545.out
    Ignored:    slurm-50628547.out
    Ignored:    slurm-50628548.out
    Ignored:    slurm-50628550.out
    Ignored:    slurm-50628552.out
    Ignored:    slurm-50628554.out
    Ignored:    slurm-50628556.out
    Ignored:    slurm-50628557.out
    Ignored:    slurm-50628559.out
    Ignored:    slurm-50628561.out
    Ignored:    slurm-50628563.out
    Ignored:    slurm-50628565.out
    Ignored:    slurm-50628567.out
    Ignored:    slurm-50628569.out
    Ignored:    slurm-50628571.out
    Ignored:    slurm-50628573.out
    Ignored:    slurm-50628576.out
    Ignored:    slurm-50628580.out
    Ignored:    slurm-50628586.out
    Ignored:    slurm-50628593.out
    Ignored:    slurm-50628600.out
    Ignored:    slurm-50628607.out
    Ignored:    slurm-50628616.out
    Ignored:    slurm-50628621.out
    Ignored:    slurm-50628623.out
    Ignored:    slurm-50628631.out
    Ignored:    slurm-50628637.out
    Ignored:    slurm-50628653.out
    Ignored:    slurm-50628677.out
    Ignored:    slurm-50628701.out
    Ignored:    slurm-50628704.out
    Ignored:    slurm-50628712.out
    Ignored:    slurm-50628723.out
    Ignored:    slurm-50628737.out
    Ignored:    slurm-50628751.out
    Ignored:    slurm-50628761.out
    Ignored:    slurm-50628771.out
    Ignored:    slurm-50628782.out
    Ignored:    slurm-50628794.out
    Ignored:    slurm-50628805.out
    Ignored:    slurm-50628817.out
    Ignored:    slurm-50628827.out
    Ignored:    slurm-50628829.out
    Ignored:    slurm-50628841.out
    Ignored:    slurm-50628855.out
    Ignored:    slurm-50628867.out
    Ignored:    slurm-50628872.out
    Ignored:    slurm-50628874.out
    Ignored:    slurm-50628878.out
    Ignored:    slurm-50628882.out
    Ignored:    slurm-50628885.out
    Ignored:    slurm-50628895.out
    Ignored:    slurm-50628908.out
    Ignored:    slurm-50628917.out
    Ignored:    slurm-50628925.out
    Ignored:    slurm-50628936.out
    Ignored:    slurm-50628950.out
    Ignored:    slurm-50628959.out
    Ignored:    slurm-50628961.out
    Ignored:    slurm-50628970.out
    Ignored:    slurm-50628981.out
    Ignored:    slurm-50628989.out
    Ignored:    slurm-50629001.out
    Ignored:    slurm-50629009.out
    Ignored:    slurm-50629020.out
    Ignored:    slurm-50629030.out
    Ignored:    slurm-50629043.out
    Ignored:    slurm-50629055.out
    Ignored:    slurm-50629064.out
    Ignored:    slurm-50629076.out
    Ignored:    slurm-50629086.out
    Ignored:    slurm-50629088.out
    Ignored:    slurm-50629089.out
    Ignored:    slurm-50629091.out
    Ignored:    slurm-50629093.out
    Ignored:    slurm-50629095.out
    Ignored:    slurm-50629096.out
    Ignored:    slurm-50629098.out
    Ignored:    slurm-50629099.out
    Ignored:    slurm-50629103.out
    Ignored:    slurm-50629104.out
    Ignored:    slurm-50629106.out
    Ignored:    slurm-50629108.out
    Ignored:    slurm-50629110.out
    Ignored:    slurm-50629112.out
    Ignored:    slurm-50629115.out
    Ignored:    slurm-50629117.out
    Ignored:    slurm-50629118.out
    Ignored:    slurm-50629120.out
    Ignored:    slurm-50629122.out
    Ignored:    slurm-50629124.out
    Ignored:    slurm-50629126.out
    Ignored:    slurm-50629128.out
    Ignored:    slurm-50629129.out
    Ignored:    slurm-50629131.out
    Ignored:    slurm-50629133.out
    Ignored:    slurm-50629135.out
    Ignored:    slurm-50629137.out
    Ignored:    slurm-50629138.out
    Ignored:    slurm-50629140.out
    Ignored:    slurm-50629142.out
    Ignored:    slurm-50629144.out
    Ignored:    slurm-50629146.out
    Ignored:    slurm-50629148.out
    Ignored:    slurm-50629150.out
    Ignored:    slurm-50629152.out
    Ignored:    slurm-50629154.out
    Ignored:    slurm-50629156.out
    Ignored:    slurm-50629157.out
    Ignored:    slurm-50629158.out
    Ignored:    slurm-50629160.out
    Ignored:    slurm-50629162.out
    Ignored:    slurm-50629164.out
    Ignored:    slurm-50629166.out
    Ignored:    slurm-50629171.out
    Ignored:    slurm-50629176.out
    Ignored:    slurm-50629186.out
    Ignored:    slurm-50629196.out
    Ignored:    slurm-50629206.out
    Ignored:    slurm-50629209.out
    Ignored:    slurm-50629215.out
    Ignored:    slurm-50629220.out
    Ignored:    slurm-50629224.out
    Ignored:    slurm-50629227.out
    Ignored:    slurm-50629229.out
    Ignored:    slurm-50629233.out
    Ignored:    slurm-50629237.out
    Ignored:    slurm-50629240.out
    Ignored:    slurm-50629243.out
    Ignored:    slurm-50629246.out
    Ignored:    slurm-50629249.out
    Ignored:    slurm-50629252.out
    Ignored:    slurm-50629253.out
    Ignored:    slurm-50629256.out
    Ignored:    slurm-50629259.out
    Ignored:    slurm-50629262.out
    Ignored:    slurm-50629265.out
    Ignored:    slurm-50629268.out
    Ignored:    slurm-50629270.out
    Ignored:    slurm-50629272.out
    Ignored:    slurm-50629274.out
    Ignored:    slurm-50629277.out
    Ignored:    slurm-50629280.out
    Ignored:    slurm-50629283.out
    Ignored:    slurm-50629284.out
    Ignored:    slurm-50629286.out
    Ignored:    slurm-50629289.out
    Ignored:    slurm-50629292.out
    Ignored:    slurm-50629295.out
    Ignored:    slurm-50629298.out
    Ignored:    slurm-50629300.out
    Ignored:    slurm-50629303.out
    Ignored:    slurm-50629306.out
    Ignored:    slurm-50629309.out
    Ignored:    slurm-50629312.out
    Ignored:    slurm-50629314.out
    Ignored:    slurm-50629316.out
    Ignored:    slurm-50629319.out
    Ignored:    slurm-50629322.out
    Ignored:    slurm-50629326.out
    Ignored:    slurm-50629328.out
    Ignored:    slurm-50629331.out
    Ignored:    slurm-50629333.out
    Ignored:    slurm-50629335.out
    Ignored:    slurm-50629338.out
    Ignored:    slurm-50629341.out
    Ignored:    slurm-50629344.out
    Ignored:    slurm-50629346.out
    Ignored:    slurm-50629349.out
    Ignored:    slurm-50629351.out
    Ignored:    slurm-50629354.out
    Ignored:    slurm-50629356.out
    Ignored:    slurm-50629358.out
    Ignored:    slurm-50629360.out
    Ignored:    slurm-50629362.out
    Ignored:    slurm-50629366.out
    Ignored:    slurm-50629367.out
    Ignored:    slurm-50629370.out
    Ignored:    slurm-50629373.out
    Ignored:    slurm-50629375.out
    Ignored:    slurm-50629378.out
    Ignored:    slurm-50629381.out
    Ignored:    slurm-50629384.out
    Ignored:    slurm-50629386.out
    Ignored:    slurm-50629389.out
    Ignored:    slurm-50629392.out
    Ignored:    slurm-50629395.out
    Ignored:    slurm-50629397.out
    Ignored:    slurm-50629400.out
    Ignored:    slurm-50629402.out
    Ignored:    slurm-50629405.out
    Ignored:    slurm-50629408.out
    Ignored:    slurm-50629410.out
    Ignored:    slurm-50629412.out
    Ignored:    slurm-50629414.out
    Ignored:    slurm-50629415.out
    Ignored:    slurm-50629421.out
    Ignored:    slurm-50629423.out
    Ignored:    slurm-50629425.out
    Ignored:    slurm-50629426.out
    Ignored:    slurm-50629428.out
    Ignored:    slurm-50629429.out
    Ignored:    slurm-50629431.out
    Ignored:    slurm-50629452.out
    Ignored:    slurm-50629454.out
    Ignored:    slurm-50629455.out
    Ignored:    slurm-50629457.out
    Ignored:    slurm-50629459.out
    Ignored:    slurm-50629461.out
    Ignored:    slurm-50629463.out
    Ignored:    slurm-50629485.out
    Ignored:    slurm-50629497.out
    Ignored:    slurm-50629515.out
    Ignored:    slurm-50629537.out
    Ignored:    slurm-50629553.out
    Ignored:    slurm-50629574.out
    Ignored:    slurm-50629577.out
    Ignored:    slurm-50629586.out
    Ignored:    slurm-50629588.out
    Ignored:    slurm-50629590.out
    Ignored:    slurm-50629592.out
    Ignored:    slurm-50629593.out
    Ignored:    slurm-50629595.out
    Ignored:    slurm-50629597.out
    Ignored:    slurm-50629600.out
    Ignored:    slurm-50629649.out
    Ignored:    slurm-50629651.out
    Ignored:    slurm-50629653.out
    Ignored:    slurm-50629655.out
    Ignored:    slurm-50629656.out
    Ignored:    slurm-50629658.out
    Ignored:    slurm-50629660.out
    Ignored:    slurm-50629662.out
    Ignored:    slurm-50629664.out
    Ignored:    slurm-50629666.out
    Ignored:    slurm-50629668.out
    Ignored:    slurm-50629669.out
    Ignored:    slurm-50629671.out
    Ignored:    slurm-50629673.out
    Ignored:    slurm-50629676.out
    Ignored:    slurm-50629677.out
    Ignored:    slurm-50629679.out
    Ignored:    slurm-50629682.out
    Ignored:    slurm-50629684.out
    Ignored:    slurm-50629686.out
    Ignored:    slurm-50629688.out
    Ignored:    slurm-50629690.out
    Ignored:    slurm-50629692.out
    Ignored:    slurm-50629693.out
    Ignored:    slurm-50629695.out
    Ignored:    slurm-50629697.out
    Ignored:    slurm-50629699.out

Untracked files:
    Untracked:  create-env.sh
    Untracked:  publish.bash
    Untracked:  snake.txt
    Untracked:  snakelog.out
    Untracked:  update-env.sh

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

Expand here to see past versions:

File	Version	Author	Date	Message
Rmd	5b3779c	John Blischak	2019-02-01	Update workflowr to 1.0.1 with wflow_update().
html	5b3779c	John Blischak	2019-02-01	Update workflowr to 1.0.1 with wflow_update().
html	da1fdf3	John Blischak	2018-02-06	Build site.
html	cf9e702	Joyce Hsiao	2017-12-13	Build site.
html	029305c	John Blischak	2017-12-04	Build site.
Rmd	6018090	pytung	2017-11-30	minor edits
html	6898149	John Blischak	2017-11-29	Build site.
Rmd	3d5d193	John Blischak	2017-11-29	Visualize sequencing depth per C1 chip.

Setup

library("dplyr")
library("DT")
library("ggplot2")
library("reshape2")
library("Biobase")
theme_set(cowplot::theme_cowplot())

fname <- Sys.glob("../data/eset/*.rds")
eset <- Reduce(combine, Map(readRDS, fname))
pData(eset)$experiment <- as.factor(pData(eset)$experiment)

Total sequencing depth

ggplot(pData(eset), aes(x = raw, color = experiment)) +
  geom_density() +
  labs(x = "Number of raw sequences per single cell", y = "Number of cells",
       title = "Distribution of total raw sequences per single cell") +
  scale_color_discrete(name = "C1 chip")

Expand here to see past versions of distribution-sequencing-depth-1.png:

Version	Author	Date
da1fdf3	John Blischak	2018-02-06
6898149	John Blischak	2017-11-29

Mapped reads per cell

ggplot(pData(eset), aes(x = experiment, y = mapped, color = experiment)) +
  geom_violin() + 
  geom_boxplot(alpha = .01, width = .2, position = position_dodge(width = .9)) +
  labs(x = "C1 chip", y = "Number of reads",
       title = "Number of mapped sequences per single cell") +
  theme(legend.title = element_blank(),
        axis.text.x = element_text(angle = 45, hjust = 1, vjust = 1))

Expand here to see past versions of mapped-1.png:

Version	Author	Date
da1fdf3	John Blischak	2018-02-06
029305c	John Blischak	2017-12-04

Sum of sequences across the 96 single cells per C1 chip.

total_per_experiment <- pData(eset) %>%
  group_by(experiment) %>%
  summarize(raw = sum(raw) / 10^6,
            mapped = sum(mapped) / 10^6,
            molecules = sum(molecules) / 10^6)
datatable(total_per_experiment,
          options = list(pageLength = nrow(total_per_experiment)),
          colnames = c("C1 chip", "Number of raw sequences",
                       "Number of mapped",
                       "Number of molecules"))

ggplot(melt(total_per_experiment, id.vars = "experiment",
            variable.name = "type", value.name = "count"),
       aes(x = experiment, y = count, color = type)) +
  geom_point() +
  labs(title = "Sequencing depth per C1 chip",
       x = "C1 chip", y = "Number of sequences") +
  theme(legend.title = element_blank(),
        axis.text.x = element_text(angle = 45, hjust = 1, vjust = 1))

Expand here to see past versions of unnamed-chunk-1-1.png:

Version	Author	Date
da1fdf3	John Blischak	2018-02-06
029305c	John Blischak	2017-12-04
6898149	John Blischak	2017-11-29

Session information

sessionInfo()

R version 3.4.1 (2017-06-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Scientific Linux 7.4 (Nitrogen)

Matrix products: default
BLAS: /project2/gilad/jdblischak/miniconda3/envs/fucci-seq/lib/R/lib/libRblas.so
LAPACK: /project2/gilad/jdblischak/miniconda3/envs/fucci-seq/lib/R/lib/libRlapack.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
[1] bindrcpp_0.2        Biobase_2.38.0      BiocGenerics_0.24.0
[4] reshape2_1.4.2      ggplot2_2.2.1       DT_0.2             
[7] dplyr_0.7.4        

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.13      compiler_3.4.1    git2r_0.19.0     
 [4] plyr_1.8.4        workflowr_1.0.1   bindr_0.1        
 [7] R.methodsS3_1.7.1 R.utils_2.5.0     tools_3.4.1      
[10] digest_0.6.12     jsonlite_1.4      evaluate_0.10.1  
[13] tibble_1.3.3      gtable_0.2.0      pkgconfig_2.0.1  
[16] rlang_0.1.2       yaml_2.1.14       stringr_1.2.0    
[19] knitr_1.16        htmlwidgets_0.9   cowplot_0.9.1    
[22] rprojroot_1.2     grid_3.4.1        glue_1.1.1       
[25] R6_2.2.0          rmarkdown_1.8     magrittr_1.5     
[28] whisker_0.3-2     backports_1.0.5   scales_0.5.0     
[31] htmltools_0.3.6   assertthat_0.1    colorspace_1.3-2 
[34] labeling_0.3      stringi_1.1.2     lazyeval_0.2.0   
[37] munsell_0.4.3     R.oo_1.21.0

This reproducible R Markdown analysis was created with workflowr 1.0.1

Sequencing depth per C1 chip

John Blischak

2017-11-28

Setup

Total sequencing depth

Session information